PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_12652_BGI-A2_v1.0
Common NameF383_10985
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 925aa    MW: 102859 Da    PI: 6.7979
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_12652_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK93.71.3e-29606657152
                      RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GIkRWP+Rkik++
  Cotton_A_12652_BGI-A2_v1.0 606 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGIKRWPSRKIKKV 657
                                 589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.905596677IPR003035RWP-RK domain
PfamPF020423.6E-26609657IPR003035RWP-RK domain
SuperFamilySSF542779.16E-23828915No hitNo description
PROSITE profilePS5174526.329829912IPR000270PB1 domain
SMARTSM006665.2E-28829912IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.2E-22830909No hitNo description
PfamPF005643.1E-19831911IPR000270PB1 domain
CDDcd064074.90E-41831910No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MEDTIFSQGT MLGGLPDSAM DFDYMDELLL DGCWLETTQG SDFLNPTLPF SNNFFDPAFA  60
WPTTESNAGD LGGGLSHQGE NQRSLLSGNS HWNEAQGESL VSPHFSQSHS LDSDCVTDGS  120
EPNRRWWIRP SVNSGPATTV MQRLIQALGY IKAFGKEKDV LVQLWLPVNR GGRRFLTTSE  180
QPFSLDSKSQ KLASYRNISV KYNFPAEEDS KDMAGLPGRV FLSKVPEWTP DVRFFKRDEY  240
PRVGHAQEHD VRGTFALPVF EQGSGTCLGV IEVVMTTEKI KIQPELESVC KALEAVNLRS  300
SITSSTQNIK AYSNCYQAAL PEIKELLRCA CETHRLPLAQ AWVPCIQQGK EGCRHSSENY  360
VHCVSTVDDA CCIADPSIQG FHEACSEHHL LKGQGVVGRA FMTNQPCFMT DITSFKKTEY  420
PLAHHAMMFN LHAAVAIRFR SIHTGKADFV LEFFLPAHCR DPEGQRKMLN SLSIIIQQVC  480
CSLRVVTDKE LVEETDLAVS EVVAPSDGLP IREESLKQQC TRHHSKKLSG ESSSCLTKVQ  540
QSSNTALVLE KEKPRPMLDE KIPEVEQHQQ HISLQESVEC GDSTFNEISF SSVTMGKTSE  600
KRRSKAEKTI TLQVLRQYFA GSLKDAAKSL GVCPTTLKRI CRQHGIKRWP SRKIKKVGHS  660
LQKLQHVIDS VQGASGAFHI SNFYANFPEL ASPKLLGNSA LSTSPLNDKP KQINIQPEGG  720
NFLSQGALSN SPSSSCSQSS SSSHSCSSGT HRPSNFNMPG KEDHIIGDNS GDGELKRVKS  780
DVELHALSQE GPKLFPRSQS LRSLKEQLIC DNLQPISKNT SPIAHDLEAQ RVKVTYGDEK  840
IRFRMQSKWR FKDLLHEIAR RFNIDDISRF DLKYLDDDSE WVLLTCDADM VECIDVCGSS  900
QGNTIKLSLQ VSHHHLDQFS GSTGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464609.10.0PREDICTED: protein NLP4-like
RefseqXP_012464617.10.0PREDICTED: protein NLP4-like
RefseqXP_012464624.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A0B0PXA30.0A0A0B0PXA3_G
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein